Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015954321.1_cds_XP_016493224.1_83356
CDS Infomation

[gene=LOC107812591] [db_xref=GeneID:107812591] [protein=aspartate--tRNA ligase, chloroplastic/mitochondrial-like] [protein_id=XP_016493224.1] [location=complement(join(15505..15674,16397..16454,16544..16624,16727..16825,18049..18120,19745..19891,28501..28621,28864..28955,29334..29405,29594..29705,31098..31207,32777..32920,33723..34217))] [gbkey=CDS]
Sequence

ATGTATGAGCGCACACAACGGTCCAATTCAATCTGCTCCAAAACCTCAAATCTTGTCCAC
AAAACTGTAAAACCTCTAAAGCAAAAAAATCCTTCCCTGTTCTTCGCCATGTCCCTCTTC
TTCCGTTCCTTACCCACCATAGGTCTTCGCTCAAAACCTTCCCCTCTCACTTCTCTACCT
TTCTTCTTCCTTAATAATTTCCACAACCACCCCATTATTATTACCCCAACTTCACTTATC
AGTAGCCGCACGCTTTCTTCCGCCTTTGCCACTGGTCCTTTAACTTCCGTTGAAACACTT
ACCCCTAGCACCAAAAATTCTCTATCTCCTACAACTACTGATACCCTTCAATGGGTTAGC
AGGACTCAATACTGTGGTGAATTATCGGAAAACGATGTGGGTAAACGGGTTCGGCTTTGC
GGGTGGGTCGCCCTTCATCGGATTCATGGTGGTTTGACTTTCGTCAACCTCAGGGACCAA
ACTGGAATTGTTCAGATTACGACACTTCCTGATGATTTTCCTGATGCTCATTCTGCTGTG
AGCGATCTGAGGCTTGAATATGTAGTTGCCATTGAAGGTGTTGTTCGGCCTAGGCCAGCT
GACTCTGTCAACAAAAAGATGAAAACTGGCACGATAGAGGTTGCTGCAGAGGATGTCCAG
GTGTTGAATGCAGTAAGATTGAAGTTACCCTTCTTGGTAACAACTGCAGACGATGCAAAA
GATTCAGCTAAGGAAGAAATCAGATTGCGATATCGATGCCTTGATTTACGCCGTCCACAA
ATGAACTCAAATATAATCTTGCGACATAGAGTAGTGAAACTTCTCCGAAGATACCTAGAA
GATGTGCATGGTTTTGTCGAGATTGAGACTCCAATACTATCTAGATCTACTCCTGAAGGT
GCTCGTGATTATTTGGTCCCTTCTAGAGTTCAGTCAGGAACATTTTATGCACTACCCCAG
AGTCCTCAGCTGTTCAAGCAAATGCTAATGGTCTCTGGTTTTGATAAGTACTATCAAATA
GCAAGGTGCTTTAGGGATGAAGATTTGAGAGCTGACAGACAACCTGAGTTTACGCAGCTG
GATATGGAAATGGCTTTCACTTCTATGGAGGACATGCTGAAACTCAATGAGGATTTGATT
AGAAAGGTTTTTCAGGAAATCCAAGGTGTCCAACTGCCAAATCCTTTTCCAAGGCTTACA
TATGCTGAAGCAATGAGTCGATATGGTTCAGACAGACCAGATACTCGTTTTGATGTCGAA
TTGAGAGATGTAATTCTTCTGCAGACTCCAATATCCAGGCATTCAATACTCTGGGTGACT
GACTTTCCAATGTTTGAGTGGAATGATTCAGAACAGAGATTTGAGGCCTTGCATCATCCT
TTCACCGCACCTAATCCAGACGATATAAATGACCTCTCTTCTGCCCGTGCCTTAGCTTAT
GACATGGTTTACAATGGAGTTGAGATTGGTGGAGGAAGCTTGAGAATTTACAAGCGTGAA
GTCCAAGAGAAGGTTCTCAATATTGTTGGCATTTCCCGAGAACAGGCTGAAGCAAAATTT
GGCTATCTTTTGGAGGCTCTGGACATGGGTGCTCCTCCTCACGGAGGAATTGCTTATGGG
TTGGATAGATTGGTGATGCTCTTGGCTGGCACTAATTCCATCAGGGATGTTATAGCTTTT
CCAAAGACAACAACTGCTCAATGTGCCCTTACTCGTTCACCATCAGAGGTCGATCCACAG
CAGCTTAAAGATCTTTCATTACAGAAGATGTAG

Peptide Sequence

PEP ID

XP_016493224.1
PEP Infomation

PREDICTED: aspartate--tRNA ligase, chloroplastic/mitochondrial-like [Nicotiana tabacum]
Sequence

MYERTQRSNSICSKTSNLVHKTVKPLKQKNPSLFFAMSLFFRSLPTIGLRSKPSPLTSLP
FFFLNNFHNHPIIITPTSLISSRTLSSAFATGPLTSVETLTPSTKNSLSPTTTDTLQWVS
RTQYCGELSENDVGKRVRLCGWVALHRIHGGLTFVNLRDQTGIVQITTLPDDFPDAHSAV
SDLRLEYVVAIEGVVRPRPADSVNKKMKTGTIEVAAEDVQVLNAVRLKLPFLVTTADDAK
DSAKEEIRLRYRCLDLRRPQMNSNIILRHRVVKLLRRYLEDVHGFVEIETPILSRSTPEG
ARDYLVPSRVQSGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQL
DMEMAFTSMEDMLKLNEDLIRKVFQEIQGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDVE
LRDVILLQTPISRHSILWVTDFPMFEWNDSEQRFEALHHPFTAPNPDDINDLSSARALAY
DMVYNGVEIGGGSLRIYKREVQEKVLNIVGISREQAEAKFGYLLEALDMGAPPHGGIAYG
LDRLVMLLAGTNSIRDVIAFPKTTTAQCALTRSPSEVDPQQLKDLSLQKM

Transcript Sequence

Gene sequence data has not been registered.